Basic Information
Locus ID:
evm.TU.utg000011l.267
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000011l | 2125705 | 2130171 | - | evm.TU.utg000011l.267 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.65 | 40,979.69 Da | 52.43 | 84.93 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 2.73171E-32 | - |
| CDD | cd14382 | UBA2_RAD23_plant | 331 | 373 | 4.77073E-24 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.0E-19 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 154 | 192 | 8.4E-12 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 335 | 370 | 8.4E-12 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 255 | 310 | 7.8E-21 | IPR015360 |
| SUPERFAMILY | SSF46934 | UBA-like | 316 | 377 | 5.8E-15 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 82 | 1.54E-23 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 252 | 316 | 1.1E-19 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 152 | 202 | 2.79E-10 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 147 | 197 | 1.3E-18 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 327 | 374 | 1.7E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 4.9E-29 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 245 | 311 | 9.7E-25 | IPR036353 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 6.9E-23 | IPR000626 |
| SMART | SM00165 | uba_6 | 335 | 372 | 3.4E-9 | IPR015940 |
| SMART | SM00727 | CBM | 253 | 296 | 8.9E-4 | IPR006636 |
| SMART | SM00165 | uba_6 | 154 | 194 | 6.7E-4 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 378 | 3.1E-110 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 332 | 373 | 14.643341 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 155 | 195 | 10.66732 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 76 | 19.738609 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 361 | 376 | 2.4E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 346 | 360 | 2.4E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 329 | 345 | 2.4E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 281 | 303 | 2.4E-32 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 117 | - | - |
| Coils | Coil | Coil | 282 | 302 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_012077962.2 | ubiquitin receptor RAD23c isoform X4 [Jatropha curcas] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A1Q3C6B9 | Ubiquitin receptor RAD23 OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_19139 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology