Basic Information
Locus ID:
evm.TU.utg000011l.1329
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000011l | 13254496 | 13260161 | - | evm.TU.utg000011l.1329 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.15 | 79,999.29 Da | 58.92 | 80.43 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 30 | 220 | 7.30786E-89 | - |
| CDD | cd18794 | SF2_C_RecQ | 221 | 349 | 2.93569E-58 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 45 | 200 | 7.0E-11 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 353 | 424 | 4.6E-12 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 247 | 338 | 2.7E-8 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 25 | 212 | 1.91E-30 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 219 | 449 | 2.66E-40 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 8 | 220 | 6.7E-72 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 221 | 442 | 7.8E-58 | IPR027417 |
| SMART | SM00487 | ultradead3 | 37 | 229 | 3.9E-17 | IPR014001 |
| SMART | SM00490 | helicmild6 | 264 | 340 | 2.7E-13 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 31 | 428 | 1.6E-122 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 233 | 380 | 12.256699 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 49 | 213 | 17.67672 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 678 | 718 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 678 | 705 | - | - |
| Coils | Coil | Coil | 495 | 515 | - | - |
| Coils | Coil | Coil | 546 | 566 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_021649893.1 | ATP-dependent DNA helicase Q-like 3 isoform X1 [Hevea brasiliensis] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JLS8 | ATP-dependent DNA helicase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology