Basic Information
Locus ID:
evm.TU.utg000011l.1297
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
May be involved in modulation of pathogen defense and leaf cell death
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000011l | 13062732 | 13069923 | + | evm.TU.utg000011l.1297 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 106,675.71 Da | 45.23 | 87.08 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01452 | VWA_26S_proteasome_subunit | 556 | 742 | 1.80944E-106 | - |
| Pfam | PF03094 | Mlo family | 6 | 464 | 2.8E-157 | IPR004326 |
| Pfam | PF02809 | Ubiquitin interaction motif | 778 | 791 | 2.1 | IPR003903 |
| Pfam | PF02809 | Ubiquitin interaction motif | 846 | 861 | 0.14 | IPR003903 |
| Pfam | PF13519 | von Willebrand factor type A domain | 561 | 670 | 2.2E-26 | IPR002035 |
| Pfam | PF02809 | Ubiquitin interaction motif | 880 | 893 | 0.79 | IPR003903 |
| SUPERFAMILY | SSF53300 | vWA-like | 559 | 726 | 1.88E-36 | IPR036465 |
| Gene3D | G3DSA:1.10.287.3990 | - | 774 | 860 | 4.3E-18 | - |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 558 | 740 | 1.6E-79 | IPR036465 |
| SMART | SM00726 | uim | 776 | 795 | 11.0 | IPR003903 |
| SMART | SM00327 | VWA_4 | 559 | 739 | 5.0E-13 | IPR002035 |
| SMART | SM00726 | uim | 846 | 865 | 0.81 | IPR003903 |
| SMART | SM00726 | uim | 878 | 897 | 65.0 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 776 | 795 | 8.934976 | IPR003903 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 560 | 743 | 11.362327 | IPR002035 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 846 | 865 | 9.328097 | IPR003903 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 447 | 486 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 924 | 958 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 943 | 958 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 796 | 816 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 817 | 837 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 796 | 841 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 502 | 542 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 459 | 486 | - | - |
| Coils | Coil | Coil | 833 | 853 | - | - |
| Coils | Coil | Coil | 786 | 806 | - | - |
Gene Ontology
Biological Process:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11000.1 | Seven transmembrane MLO family protein. A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO4 belongs to the clade I, with AtMLO11 and AtMLO14. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of root, cotyledons and young leaves, it was not expressed in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). | 0 |
| RefSeq | XP_024456695.1 | MLO-like protein 4 [Populus trichocarpa] | 0 |
| O23693 | MLO-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=MLO4 PE=2 SV=2 | 0 | |
| TrEMBL | A0A371GCP7 | 26S proteasome non-ATPase regulatory subunit 4-like protein (Fragment) OS=Mucuna pruriens OX=157652 GN=RPN10 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg17219, jg39596 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24120 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026845 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g130470 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13725, Sbi_jg52191 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9658 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017536 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl33267, Sgl38599, Sgl38657 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000002300, gene:ENSEOMG00000003765 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0019950, CQ.Regalona.r1.6BG0021020 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30111350, pistato.v30293450 |
| Apiaceae | Apium graveolens | 1 | Ag4G00393 |
| Arecaceae | Cocos nucifera | 3 | COCNU_07G002300, COCNU_09G004270, COCNU_10G001630 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103700880, gene-LOC103706166, gene-LOC103720462 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.2146.V1.1, AsparagusV1_10.196.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G23254 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G38630.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025445m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g37150.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g089600.2N, BniB03g015690.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0159 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0174 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g05970 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0070s00022.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g02290 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG02.2779, evm.TU.LG08.297, evm.TU.LG09.226 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00020382, Pov_00020407 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G06149, Lb3G16965, Lb3G18067 |
| Poaceae | Echinochloa crus-galli | 7 | AH01.2595, AH01.4370, BH01.2918, BH01.2919, CH01.3113 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_3AG0240610, gene-QOZ80_3BG0287420 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0392700.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_069345 |
| Poaceae | Oryza coarctata | 2 | Oco05G007870, Oco06G008170 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g13970.1, LOC_Os10g05180.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G132600, gene-BS78_01G421300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0101997 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G029160, Chr04G000460, Chr07G000540, Chr12G010330 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G394400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG010410, gene_TRIDC4BG040100 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G071300.2, TraesCS4B02G227200.2 ... |
| Poaceae | Zea mays | 4 | Zm00001eb010400_P001, Zm00001eb026350_P004 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2310, nbis-gene-3910 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1670, Zma_g4043 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.1559, evm.TU.LG05.334, evm.TU.LG12.230 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc06g09560, gene.Posoc09g06830 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_3_RagTag.87, evm.TU.Scaffold_3_RagTag.88 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-17006, nbisL1-mrna-5102, nbisL1-mrna-6040 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13359 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-3254, nbisL1-mrna-5887, nbisL1-mrna-9366 |
| Rhizophoraceae | Kandelia candel | 4 | add.evm.TU.utg000019l.489, evm.TU.utg000009l.1169 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00007619, Maker00016934 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-15669, nbisL1-mrna-4630, nbisL1-mrna-6566 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-22444, nbisL1-mrna-2991 |
| Salicaceae | Populus euphratica | 3 | populus_peu08723, populus_peu23270, populus_peu36630 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132617346, gene-LOC132621678 |
| Solanaceae | Solanum chilense | 1 | SOLCI001430300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011568 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_16257, gene_2859 |
| Zosteraceae | Zostera marina | 1 | Zosma05g31230.v3.1 |