Basic Information
Locus ID:
evm.TU.utg000011l.1195
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
lysM domain receptor-like kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000011l | 12251931 | 12255392 | - | evm.TU.utg000011l.1195 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 89,668.40 Da | 42.64 | 99.06 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01476 | LysM domain | 351 | 395 | 1.5E-4 | IPR018392 |
| Pfam | PF05562 | Cold acclimation protein WCOR413 | 31 | 158 | 8.6E-24 | IPR008892 |
| Pfam | PF00069 | Protein kinase domain | 544 | 786 | 1.0E-37 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 504 | 789 | 2.91E-62 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 588 | 806 | 1.8E-53 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 350 | 397 | 4.9E-5 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 481 | 586 | 3.7E-14 | - |
| SMART | SM00220 | serkin_6 | 523 | 789 | 1.2E-16 | IPR000719 |
| SMART | SM00257 | LysM_2 | 350 | 395 | 0.36 | IPR018392 |
| SMART | SM00257 | LysM_2 | 284 | 330 | 2.6 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 445 | 793 | 30.944286 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 349 | 394 | 10.470674 | IPR018392 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 400 | 425 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 418 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23770.1 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein. | 0 |
| RefSeq | XP_002533278.1 | lysM domain receptor-like kinase 4 [Ricinus communis] | 0 |
| O64825 | LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana OX=3702 GN=LYK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A438GM42 | LysM domain receptor-like kinase 4 OS=Vitis vinifera OX=29760 GN=LYK4_5 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology