Basic Information
Locus ID:
evm.TU.utg000011l.1035
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000011l | 10628475 | 10633207 | + | evm.TU.utg000011l.1035 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.77 | 90,554.17 Da | 49.05 | 75.00 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 73 | 110 | 4.6E-9 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 353 | 653 | 1.3E-43 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 350 | 658 | 7.65E-83 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 68 | 113 | 7.32E-11 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 347 | 664 | 4.7E-89 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 56 | 113 | 3.7E-12 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 353 | 656 | 49.602055 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 73 | 110 | 11.559457 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 73 | 110 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 354 | 369 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 305 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 166 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 680 | 698 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 166 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 674 | 698 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_012081650.1 | ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2JJZ9 | Uncharacterized protein MANES_12G127400 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology