Basic Information
Locus ID:
evm.TU.utg000010l.460
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000010l | 3448610 | 3454369 | - | evm.TU.utg000010l.460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 66,802.71 Da | 51.53 | 59.83 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 137 | 187 | 6.82309E-14 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 206 | 268 | 2.6E-14 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 285 | 332 | 2.5E-9 | IPR002867 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 563 | 589 | 8.63E-7 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 206 | 275 | 1.15E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 132 | 218 | 2.18E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 287 | 335 | 7.46E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 131 | 217 | 8.5E-17 | IPR013083 |
| Gene3D | G3DSA:2.30.30.380 | - | 559 | 589 | 6.7E-6 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 264 | 519 | 1.6E-84 | - |
| SMART | SM00647 | ibrneu5 | 281 | 342 | 0.056 | IPR002867 |
| SMART | SM00547 | zf_4 | 564 | 588 | 2.6E-6 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 206 | 268 | 3.2E-23 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 137 | 181 | 9.00757 | IPR001841 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 562 | 589 | 8.716089 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 133 | 346 | 49.68351 | IPR044066 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 566 | 585 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 527 | 559 | - | - |
| Coils | Coil | Coil | 354 | 374 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_021632765.1 | probable E3 ubiquitin-protein ligase ARI8 [Manihot esculenta] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2LQL9 | RBR-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology