Basic Information
Locus ID:
evm.TU.utg000010l.353
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000010l | 2735154 | 2737676 | + | evm.TU.utg000010l.353 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 41,078.18 Da | 35.22 | 99.89 | 0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00023 | Ankyrin repeat | 176 | 201 | 0.0031 | IPR002110 |
| Pfam | PF13857 | Ankyrin repeats (many copies) | 127 | 169 | 2.9E-6 | - |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 19 | 84 | 4.1E-8 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 225 | 4.04E-30 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 96 | 221 | 1.9E-20 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 9 | 87 | 1.3E-10 | IPR036770 |
| SMART | SM00248 | ANK_2a | 172 | 204 | 0.012 | IPR002110 |
| SMART | SM00248 | ANK_2a | 29 | 58 | 9.6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 63 | 94 | 240.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 129 | 158 | 7.8E-5 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 172 | 198 | 9.51093 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 129 | 158 | 10.524231 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 129 | 161 | 11.19366 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 172 | 198 | 9.489508 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_021648639.1 | E3 ubiquitin-protein ligase XBAT33-like [Hevea brasiliensis] | 0 |
| Q4FE45 | E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A835JD74 | RING-type domain-containing protein OS=Salix dunnii OX=1413687 GN=SADUNF_Sadunf15G0118500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology