Basic Information
Locus ID:
evm.TU.utg000010l.235
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Short Name:
UBC27
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000010l | 1828036 | 1829084 | - | evm.TU.utg000010l.235 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 28,617.75 Da | 55.11 | 91.95 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 6 | 138 | 1.6E-17 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 5 | 139 | 1.04E-20 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 3 | 150 | 7.9E-20 | IPR016135 |
| SMART | SM00212 | ubc_7 | 5 | 149 | 2.1E-11 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 2 | 149 | 19.227924 | IPR000608 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_011073121.1 | ubiquitin-conjugating enzyme E2 27 isoform X2 [Sesamum indicum] | 0 |
| P52484 | Ubiquitin-conjugating enzyme E2 21 OS=Caenorhabditis elegans OX=6239 GN=ubc-21 PE=3 SV=3 | 0 | |
| TrEMBL | A0A6I9SZ68 | E2 ubiquitin-conjugating enzyme OS=Sesamum indicum OX=4182 GN=LOC105158169 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.1172 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000010l.235 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009039 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17008 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8822 |