Basic Information
Locus ID:
evm.TU.utg000010l.123
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
phosphatase 2A 55 kDa regulatory subunit B
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000010l | 1053413 | 1059492 | + | evm.TU.utg000010l.123 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 57,677.05 Da | 46.16 | 75.08 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 216 | 253 | 0.048 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 36 | 500 | 6.5E-35 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 34 | 183 | 5.0E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 203 | 504 | 2.1E-17 | IPR015943 |
| SMART | SM00320 | WD40_4 | 470 | 507 | 62.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 257 | 304 | 48.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 214 | 253 | 0.41 | IPR001680 |
| SMART | SM00320 | WD40_4 | 28 | 63 | 20.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 365 | 419 | 25.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 101 | 141 | 6.6 | IPR001680 |
| PIRSF | PIRSF037309 | PPA2_B55 | 6 | 508 | 2.3E-168 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 225 | 252 | 6.9E-131 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 253 | 280 | 6.9E-131 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 117 | 145 | 6.9E-131 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 310 | 337 | 6.9E-131 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 392 | 418 | 6.9E-131 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 366 | 391 | 6.9E-131 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 281 | 309 | 6.9E-131 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 88 | 116 | 6.9E-131 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 338 | 365 | 6.9E-131 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 477 | 506 | 6.9E-131 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 42 | 62 | 6.9E-131 | IPR000009 |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03015 (mRNA surveillance pathway)
map03015 (mRNA surveillance pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04390 (Hippo signaling pathway)
map04390 (Hippo signaling pathway)
ko04391 (Hippo signaling pathway - fly)
map04391 (Hippo signaling pathway - fly)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17720.2 | Protein phosphatase 2A, regulatory subunit PR55. type 2A protein serine/threonine phosphatase 55 kDa B | 0 |
| RefSeq | XP_050256288.1 | serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1 [Quercus robur] | 0 |
| A2X2K3 | Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. indica OX=39946 GN=OsI_006296 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7N2MPK5 | Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Quercus lobata OX=97700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology