Basic Information
Locus ID:
evm.TU.utg000009l.910
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000009l | 9030903 | 9037836 | + | evm.TU.utg000009l.910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.98 | 104,237.07 Da | 42.92 | 83.35 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 574 | 614 | 4.28096E-19 | - |
| Pfam | PF16135 | Tify domain binding domain | 243 | 298 | 1.3E-12 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 524 | 558 | 3.1E-7 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 575 | 616 | 4.9E-8 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 655 | 719 | 1.68E-7 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 563 | 621 | 1.91E-16 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 658 | 721 | 7.1E-11 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 561 | 649 | 6.6E-18 | IPR013083 |
| SMART | SM00249 | PHD_3 | 662 | 719 | 1.2E-4 | IPR001965 |
| SMART | SM00249 | PHD_3 | 574 | 615 | 1.9E-11 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 572 | 617 | 10.326599 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 575 | 614 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 374 | 392 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 410 | 429 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 374 | 400 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 415 | 429 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36720.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_012082509.1 | uncharacterized protein LOC105642316 [Jatropha curcas] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MRG7 | PHD-type domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology