Basic Information
Locus ID:
evm.TU.utg000009l.887
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
40S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000009l | 8835541 | 8836410 | + | evm.TU.utg000009l.887 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.78 | 14,145.46 Da | 38.11 | 86.61 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 28 | 123 | 2.5E-23 | IPR027486 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 26 | 124 | 7.06E-26 | IPR036838 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 15 | 126 | 1.2E-42 | IPR036838 |
| SMART | SM01403 | Ribosomal_S10_2 | 28 | 123 | 1.3E-32 | IPR027486 |
| TIGRFAM | TIGR01046 | uS10_euk_arch: ribosomal protein uS10 | 25 | 124 | 2.3E-36 | IPR005729 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 26 | 39 | 3.0E-10 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 62 | 77 | 3.0E-10 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 84 | 98 | 3.0E-10 | IPR001848 |
| Hamap | MF_00508 | 30S ribosomal protein S10 [rpsJ]. | 24 | 124 | 15.530485 | IPR001848 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45030.1 | Ribosomal protein S10p/S20e family protein. | 0 |
| RefSeq | XP_021909055.1 | 40S ribosomal protein S20-2 [Carica papaya] | 0 |
| P49200 | Small ribosomal subunit protein uS10z/uS10x OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2JVY4 | Ribosomal_S10 domain-containing protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology