Basic Information
Locus ID:
evm.TU.utg000009l.856
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000009l | 8579772 | 8596458 | + | evm.TU.utg000009l.856 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.55 | 261,700.97 Da | 45.72 | 88.73 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1952 | 2347 | 5.30663E-115 | IPR000569 |
| Pfam | PF00573 | Ribosomal protein L4/L1 family | 31 | 271 | 3.1E-38 | IPR002136 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1998 | 2349 | 3.3E-82 | IPR000569 |
| Pfam | PF00808 | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 489 | 553 | 2.4E-26 | IPR003958 |
| Pfam | PF14374 | 60S ribosomal protein L4 C-terminal domain | 285 | 357 | 3.9E-28 | IPR025755 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1946 | 2342 | 9.42E-95 | IPR035983 |
| SUPERFAMILY | SSF52166 | Ribosomal protein L4 | 27 | 272 | 3.92E-77 | IPR023574 |
| SUPERFAMILY | SSF48371 | ARM repeat | 903 | 1321 | 7.92E-32 | IPR016024 |
| SUPERFAMILY | SSF47113 | Histone-fold | 486 | 588 | 4.81E-38 | IPR009072 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 2233 | 2347 | 5.6E-34 | - |
| Gene3D | G3DSA:3.40.1370.10 | - | 6 | 313 | 1.1E-139 | IPR023574 |
| Gene3D | G3DSA:1.10.20.10 | Histone, subunit A | 478 | 619 | 4.0E-46 | IPR009072 |
| Gene3D | G3DSA:1.25.10.10 | - | 876 | 1325 | 1.3E-44 | IPR011989 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1900 | 2123 | 7.9E-39 | - |
| SMART | SM00119 | hect_3 | 1964 | 2349 | 8.4E-100 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1966 | 2349 | 63.465683 | IPR000569 |
| ProSitePatterns | PS00685 | NF-YB/HAP3 subunit signature. | 520 | 536 | - | IPR003956 |
| ProSitePatterns | PS00939 | Ribosomal protein L1e signature. | 125 | 151 | - | IPR013000 |
| PRINTS | PR00615 | CCAAT-binding transcription factor subunit A signature | 536 | 554 | 1.3E-17 | - |
| PRINTS | PR00615 | CCAAT-binding transcription factor subunit A signature | 555 | 573 | 1.3E-17 | - |
| PRINTS | PR00615 | CCAAT-binding transcription factor subunit A signature | 517 | 535 | 1.3E-17 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1611 | 1639 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 483 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 464 | 483 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1607 | 1640 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 824 | 885 | - | - |
| Coils | Coil | Coil | 347 | 367 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_021666883.1 | E3 ubiquitin-protein ligase UPL4-like [Hevea brasiliensis] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2P2M423 | HECT-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology