Basic Information
Locus ID:
evm.TU.utg000009l.75
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000009l | 569016 | 572412 | - | evm.TU.utg000009l.75 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 44,428.58 Da | 62.83 | 66.49 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 340 | 380 | 8.58865E-27 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 339 | 385 | 1.1E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 340 | 386 | 3.53E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 326 | 394 | 1.0E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 341 | 379 | 3.3E-4 | IPR001841 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 6 | 96 | 370.0 | IPR017066 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 317 | 391 | 5.4E-9 | IPR017066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 341 | 380 | 11.795887 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021684009.1 | probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Hevea brasiliensis] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1I9W0F6 | RING-type E3 ubiquitin transferase OS=Populus tomentosa OX=118781 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology