Basic Information
Locus ID:
evm.TU.utg000009l.62
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
C4-type zinc-finger of DNA polymerase delta
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000009l | 484356 | 488079 | + | evm.TU.utg000009l.62 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.98 | 92,739.04 Da | 59.27 | 56.81 | -1.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 368 | 396 | 4.3E-9 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 402 | 429 | 1.6E-4 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 361 | 397 | 4.32E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 399 | 431 | 1.3E-8 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 360 | 398 | 1.0E-15 | - |
| SMART | SM00547 | zf_4 | 370 | 394 | 6.8E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 403 | 427 | 0.015 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 401 | 430 | 9.269407 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 368 | 397 | 10.048569 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 372 | 391 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 405 | 424 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 783 | 813 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 603 | 625 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 439 | 463 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 362 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 690 | 742 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 502 | 519 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 439 | 462 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 560 | 813 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 354 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 743 | 782 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 486 | 548 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 661 | 689 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_052302205.1 | uncharacterized protein LOC7473293 isoform X6 [Populus trichocarpa] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2IUY3 | DNA polymerase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology