Basic Information
Locus ID:
evm.TU.utg000009l.604
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000009l | 6695685 | 6701938 | - | evm.TU.utg000009l.604 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 110,043.13 Da | 39.24 | 83.83 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 818 | 962 | 2.85824E-53 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 371 | 961 | 5.0E-83 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 369 | 964 | 1.37E-108 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 762 | 965 | 2.2E-54 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 366 | 608 | 7.6E-69 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 371 | 964 | 57.841965 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 907 | 924 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 372 | 387 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_021652404.1 | ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Hevea brasiliensis] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2M494 | Ubiquitin carboxyl-terminal hydrolase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology