Basic Information
Locus ID:
evm.TU.utg000009l.593
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Cell division cycle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000009l | 6605512 | 6607678 | - | evm.TU.utg000009l.593 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.45 | 50,382.89 Da | 42.02 | 72.81 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 253 | 288 | 1.8E-6 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 166 | 228 | 1.4E-5 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 388 | 423 | 0.013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 305 | 338 | 0.069 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 124 | 424 | 6.1E-55 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 72 | 426 | 4.1E-116 | IPR015943 |
| SMART | SM00320 | WD40_4 | 341 | 381 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 297 | 338 | 0.0021 | IPR001680 |
| SMART | SM00320 | WD40_4 | 384 | 423 | 2.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 202 | 243 | 5.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 249 | 288 | 4.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 160 | 199 | 5.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 114 | 155 | 30.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 256 | 288 | 10.864685 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 391 | 424 | 12.413288 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 391 | 424 | 10.337415 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 167 | 199 | 9.493783 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 256 | 288 | 13.081652 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 167 | 208 | 12.413288 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 410 | 424 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33260.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.2) | 0 |
| RefSeq | XP_012090887.1 | cell division cycle 20.2, cofactor of APC complex [Jatropha curcas] | 0 |
| Q9S7I8 | Cell division cycle 20.2, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-2 PE=1 SV=1 | 0 | |
| TrEMBL | V4SW50 | ANAPC4_WD40 domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10011710mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology