Basic Information
Locus ID:
evm.TU.utg000009l.495
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
U1 small nuclear ribonucleoprotein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000009l | 5603685 | 5616758 | - | evm.TU.utg000009l.495 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.04 | 67,854.57 Da | 51.72 | 74.13 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12245 | RRM_scw1_like | 467 | 539 | 6.58394E-37 | - |
| Pfam | PF02320 | Ubiquinol-cytochrome C reductase hinge protein | 61 | 122 | 9.7E-21 | IPR023184 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 471 | 532 | 1.3E-9 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 294 | 531 | 4.21E-17 | IPR035979 |
| SUPERFAMILY | SSF81531 | Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 53 | 122 | 5.89E-24 | IPR036811 |
| Gene3D | G3DSA:1.10.287.20 | - | 51 | 122 | 1.3E-22 | IPR036811 |
| Gene3D | G3DSA:3.30.70.330 | - | 457 | 540 | 6.7E-18 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 290 | 377 | 4.2E-16 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 470 | 540 | 6.9E-7 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 297 | 367 | 0.024 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 469 | 535 | 10.616019 | IPR000504 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G21215.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_021678433.1 | U1 small nuclear ribonucleoprotein A-like [Hevea brasiliensis] | 0 |
| Q0WWE3 | Cytochrome b-c1 complex subunit 6-1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=QCR6-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JXT3 | Uncharacterized protein MANES_03G081700 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg17954, jg27341 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9574 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah016035 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g188970 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25749, Sbi_jg9573 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19064 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00027946 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl43985, Sgl48752, Sgl48754 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011034, gene:ENSEOMG00000034982 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8AG0010670 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30130930 |
| Apiaceae | Apium graveolens | 1 | Ag6G01347 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G008800 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103701696, gene-LOC103707110 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2528.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G08309 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G21215.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10021034m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g19210.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g042300.2N, BniB07g050030.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0990 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1037 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g07690 |
| Dunaliellaceae | Dunaliella salina | 4 | Dusal.0230s00008.v1.0, Dusal.0635s00008.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g10930 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5338 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.646 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028881 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G18242 |
| Poaceae | Echinochloa crus-galli | 4 | AH08.1097, AH08.876, BH08.888, CH08.1023 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0624070, gene-QOZ80_8BG0649410 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0696340.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_032333 |
| Poaceae | Oryza coarctata | 2 | Oco15G005020, Oco16G004740 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g15080.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G099400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0402828 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G003370, Chr17G003100 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G497400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG040240, gene_TRIDC7BG029710 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G287800.1, TraesCS7B02G182400.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb143470_P001, Zm00001eb170900_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-44688, nbis-gene-48346 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22705 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g14020 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.1097, evm.TU.Scaffold_2_RagTag.1210 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6515 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12497, nbisL1-mrna-17278 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-18782, nbisL1-mrna-21113 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.495, evm.TU.utg000016l.851 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006063, Maker00016323 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11036 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13304 |
| Salicaceae | Populus euphratica | 2 | populus_peu05992, populus_peu19855 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633578 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014875 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16764 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G2551 |
| Zosteraceae | Zostera marina | 1 | Zosma03g06130.v3.1 |