Basic Information
Locus ID:
evm.TU.utg000009l.487
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000009l | 5507528 | 5524519 | + | evm.TU.utg000009l.487 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 130,391.02 Da | 42.73 | 80.03 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 52 | 175 | 3.62953E-39 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 193 | 521 | 2.08015E-167 | - |
| Pfam | PF00917 | MATH domain | 57 | 176 | 1.1E-18 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 620 | 872 | 4.4E-76 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 195 | 516 | 4.0E-46 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 882 | 1092 | 6.7E-56 | IPR029346 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 190 | 548 | 2.55E-97 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 48 | 184 | 3.11E-42 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 49 | 190 | 1.3E-52 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 798 | 895 | 2.4E-27 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 680 | 797 | 2.7E-44 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 191 | 520 | 1.3E-89 | - |
| SMART | SM00061 | math_3 | 52 | 156 | 2.9E-19 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 50 | 175 | 38.033897 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 195 | 519 | 40.203407 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 435 | 452 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 196 | 211 | - | IPR018200 |
| Coils | Coil | Coil | 532 | 560 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_034909427.1 | ubiquitin carboxyl-terminal hydrolase 12-like isoform X1 [Populus alba] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2MFP2 | ubiquitinyl hydrolase 1 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology