Basic Information
Locus ID:
evm.TU.utg000009l.329
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000009l | 2728662 | 2732570 | + | evm.TU.utg000009l.329 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.80 | 25,357.87 Da | 52.57 | 62.08 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 133 | 214 | 3.09218E-36 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 134 | 204 | 3.1E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 120 | 226 | 1.61E-14 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 128 | 218 | 3.6E-19 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 133 | 214 | 7.8E-6 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 132 | 218 | 11.110626 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 55 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76940.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_002515833.1 | RNA-binding protein 2 isoform X2 [Ricinus communis] | 0 |
| Q8H0P8 | RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2KDT0 | Nucleic acid binding protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology