Basic Information
Locus ID:
evm.TU.utg000009l.313
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000009l | 2559981 | 2563819 | - | evm.TU.utg000009l.313 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 72,906.59 Da | 52.06 | 83.57 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 317 | 360 | 5.97659E-16 | - |
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 184 | 225 | 9.0E-6 | IPR032872 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 26 | 94 | 1.8E-18 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 317 | 360 | 1.2E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 312 | 365 | 1.14E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 285 | 365 | 8.4E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 318 | 359 | 1.0E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 318 | 360 | 12.681067 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 494 | 520 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 494 | 513 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_002513558.2 | putative RING-H2 finger protein ATL21B [Ricinus communis] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A5J5ATF0 | RING-type domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_030947 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology