Basic Information
Locus ID:
evm.TU.utg000009l.1185
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
WD-40 repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000009l | 11288940 | 11291685 | - | evm.TU.utg000009l.1185 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.56 | 47,219.27 Da | 45.81 | 81.17 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 306 | 343 | 8.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 261 | 299 | 3.4E-4 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 23 | 95 | 2.2E-21 | IPR022052 |
| Pfam | PF00400 | WD domain, G-beta repeat | 364 | 399 | 0.0015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 220 | 256 | 0.13 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 126 | 403 | 1.68E-47 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 5 | 417 | 3.1E-128 | IPR015943 |
| SMART | SM00320 | WD40_4 | 303 | 343 | 7.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 216 | 256 | 0.001 | IPR001680 |
| SMART | SM00320 | WD40_4 | 259 | 299 | 1.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 167 | 207 | 2.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 360 | 400 | 0.003 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 367 | 401 | 9.071468 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 223 | 265 | 9.305395 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 174 | 209 | 11.176815 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 310 | 345 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 174 | 209 | 9.361965 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 310 | 345 | 11.207411 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 266 | 301 | 9.505904 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 194 | 208 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 330 | 344 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 194 | 208 | 2.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 330 | 344 | 2.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 286 | 300 | 2.9E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16780.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. | 0 |
| RefSeq | XP_011046680.1 | PREDICTED: WD-40 repeat-containing protein MSI2-like [Populus euphratica] | 0 |
| O22468 | WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana OX=3702 GN=MSI2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2J0N7 | WD-40 repeat-containing protein MSI2-like OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology