Basic Information
Locus ID:
evm.TU.utg000009l.1177
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000009l | 11246807 | 11255433 | + | evm.TU.utg000009l.1177 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 204,512.64 Da | 48.20 | 86.53 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1476 | 1889 | 1.09273E-120 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1524 | 1894 | 1.9E-78 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1468 | 1887 | 3.4E-93 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 185 | 655 | 1.77E-41 | IPR016024 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1416 | 1657 | 3.4E-43 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 176 | 485 | 3.8E-53 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1767 | 1892 | 5.8E-32 | - |
| SMART | SM00185 | arm_5 | 260 | 301 | 56.0 | IPR000225 |
| SMART | SM00119 | hect_3 | 1487 | 1894 | 9.2E-84 | IPR000569 |
| SMART | SM00185 | arm_5 | 343 | 381 | 7.1 | IPR000225 |
| SMART | SM00185 | arm_5 | 217 | 258 | 66.0 | IPR000225 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1500 | 1894 | 55.792824 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1285 | 1309 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1052 | 1077 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 672 | 688 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 689 | 713 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1141 | 1173 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1137 | 1175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1284 | 1309 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1078 | 1095 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 660 | 713 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 989 | 1029 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 988 | 1095 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 135 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_023897830.1 | E3 ubiquitin-protein ligase UPL3 [Quercus suber] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2YZV7 | HECT-type E3 ubiquitin transferase OS=Populus deltoides OX=3696 GN=H0E87_008184 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology