Basic Information
Locus ID:
evm.TU.utg000009l.1154
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
EF-hand, calcium binding motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000009l | 11066645 | 11070158 | + | evm.TU.utg000009l.1154 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.45 | 39,985.35 Da | 46.55 | 87.13 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF47473 | EF-hand | 42 | 346 | 7.65E-9 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 167 | 346 | 1.6E-5 | - |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 257 | 292 | 8.404312 | IPR002048 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38810.2 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_002313744.2 | uncharacterized protein LOC7494276 [Populus trichocarpa] | 0 |
| TrEMBL | A0A2P2IMH0 | Calcium-binding EF hand family protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg26167, jg28824, jg30344 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26646 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah007659, Ah009753 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g214810 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12122, Sbi_jg47058 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21341 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020360 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl61536, Sgl61559 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016549, gene:ENSEOMG00000039243 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0003620, CQ.Regalona.r1.9AG0020950 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30115910 |
| Apiaceae | Apium graveolens | 1 | AgUnG00640 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G001560, COCNU_10G001160 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103703878, gene-LOC103719885, gene-LOC120108568 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.2798.V1.1, AsparagusV1_04.1412.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G31067 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G38810.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025463m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g37010.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g089560.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1646 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1777 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g10230 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.250 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00001516 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G13662 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.2449, AH01.4330, BH01.2798, BH01.4644, CH01.3000 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2BG0175560, gene-QOZ80_3AG0241200 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0190500.1, HORVU.MOREX.r3.4HG0391600.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_069522 |
| Poaceae | Oryza coarctata | 4 | Oco05G008250, Oco06G008530, Oco19G001330, Oco20G001540 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g14590.1, LOC_Os10g09850.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G417000, gene-BS78_03G155800 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0101002, Pt_Chr0102054, Pt_Chr0703317 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G029570, Chr06G010440, Chr12G009950, Chr15G011930 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G715300, Tel4E01G388500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG060570, gene_TRIDC2BG064030 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G420000.1, TraesCS2B02G439100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb010730_P003, Zm00001eb224230_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2254, nbis-gene-42931 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13094, Zma_g1637 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.1904, evm.TU.LG08.949, evm.TU.LG09.51 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g10180 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.2196, evm.TU.Scaffold_2_RagTag.133 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-5077, nbisL1-mrna-5997 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11034, nbisL1-mrna-16895 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3350, nbisL1-mrna-9388 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.1154, evm.TU.utg000016l.155 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005129, Maker00016691 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14153, nbisL1-mrna-4713 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14116, nbisL1-mrna-21115 |
| Salicaceae | Populus euphratica | 2 | populus_peu08773, populus_peu36584 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599278 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008568 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.12966_chr02_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0064 |
| Zosteraceae | Zostera marina | 1 | Zosma04g23040.v3.1 |