Basic Information
Locus ID:
evm.TU.utg000009l.1129
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000009l | 10856734 | 10867222 | - | evm.TU.utg000009l.1129 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 184,175.89 Da | 41.98 | 92.39 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 419 | 727 | 6.89079E-76 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 455 | 489 | 9.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 536 | 573 | 2.4E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 651 | 686 | 9.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 608 | 641 | 0.0011 | IPR001680 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 1225 | 1628 | 1.5E-169 | IPR010714 |
| Pfam | PF00400 | WD domain, G-beta repeat | 494 | 531 | 6.7E-8 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 751 | 1178 | 3.4E-131 | IPR006692 |
| SUPERFAMILY | SSF51004 | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 647 | 1006 | 2.62E-14 | IPR011048 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 411 | 725 | 3.66E-72 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 410 | 729 | 1.1E-123 | IPR015943 |
| Gene3D | G3DSA:1.25.40.470 | - | 1050 | 1222 | 1.5E-64 | - |
| SMART | SM00320 | WD40_4 | 450 | 489 | 9.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 412 | 447 | 31.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 603 | 642 | 5.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 647 | 686 | 3.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 534 | 573 | 7.8E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 689 | 727 | 200.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 492 | 531 | 2.5E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 541 | 574 | 12.631039 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 610 | 644 | 10.574686 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 610 | 651 | 12.981398 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 654 | 687 | 12.446495 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 499 | 531 | 10.759232 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 457 | 498 | 12.714052 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 654 | 695 | 15.955617 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 499 | 540 | 13.549507 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 457 | 489 | 10.363778 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 541 | 574 | 15.320672 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 560 | 574 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 560 | 574 | 5.1E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 518 | 532 | 5.1E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 673 | 687 | 5.1E-7 | IPR020472 |
| Coils | Coil | Coil | 1535 | 1562 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62020.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_012067197.1 | coatomer subunit alpha-1 [Jatropha curcas] | 0 |
| Q94A40 | Coatomer subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=At1g62020 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2K6N8 | Coatomer subunit alpha OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology