Basic Information
Locus ID:
evm.TU.utg000009l.1127
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
beta-galactosidase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000009l | 10835746 | 10844439 | + | evm.TU.utg000009l.1127 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 110,413.67 Da | 40.96 | 72.68 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01426 | BAH domain | 724 | 838 | 9.6E-22 | IPR001025 |
| Pfam | PF17834 | Beta-sandwich domain in beta galactosidase | 347 | 418 | 1.5E-26 | IPR041392 |
| Pfam | PF01301 | Glycosyl hydrolases family 35 | 35 | 339 | 3.5E-118 | IPR031330 |
| Pfam | PF00628 | PHD-finger | 843 | 892 | 3.3E-9 | IPR019787 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 26 | 344 | 2.69E-106 | IPR017853 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 581 | 663 | 4.96E-15 | IPR008979 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 402 | 572 | 8.02E-23 | IPR008979 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 834 | 895 | 3.99E-16 | IPR011011 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 22 | 343 | 2.7E-116 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 836 | 908 | 1.5E-18 | IPR013083 |
| Gene3D | G3DSA:2.60.120.260 | - | 593 | 675 | 5.5E-11 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 442 | 584 | 1.3E-7 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 685 | 835 | 1.6E-31 | IPR043151 |
| SMART | SM00439 | BAH_4 | 723 | 839 | 1.0E-41 | IPR001025 |
| SMART | SM00249 | PHD_3 | 843 | 891 | 2.2E-6 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 841 | 893 | 9.285299 | IPR019787 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 723 | 839 | 23.738708 | IPR001025 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 844 | 890 | - | IPR019786 |
| ProSitePatterns | PS01182 | Glycosyl hydrolases family 35 putative active site. | 173 | 185 | - | IPR019801 |
| PRINTS | PR00742 | Glycosyl hydrolase family 35 signature | 618 | 632 | 5.5E-80 | IPR001944 |
| PRINTS | PR00742 | Glycosyl hydrolase family 35 signature | 171 | 186 | 5.5E-80 | IPR001944 |
| PRINTS | PR00742 | Glycosyl hydrolase family 35 signature | 59 | 77 | 5.5E-80 | IPR001944 |
| PRINTS | PR00742 | Glycosyl hydrolase family 35 signature | 287 | 302 | 5.5E-80 | IPR001944 |
| PRINTS | PR00742 | Glycosyl hydrolase family 35 signature | 250 | 265 | 5.5E-80 | IPR001944 |
| PRINTS | PR00742 | Glycosyl hydrolase family 35 signature | 114 | 133 | 5.5E-80 | IPR001944 |
| PRINTS | PR00742 | Glycosyl hydrolase family 35 signature | 645 | 661 | 5.5E-80 | IPR001944 |
| PRINTS | PR00742 | Glycosyl hydrolase family 35 signature | 307 | 323 | 5.5E-80 | IPR001944 |
| PRINTS | PR00742 | Glycosyl hydrolase family 35 signature | 38 | 55 | 5.5E-80 | IPR001944 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36360.1 | beta-galactosidase 3. putative beta-galactosidase (BGAL3 gene) | 0 |
| RefSeq | XP_052308082.1 | beta-galactosidase 3 isoform X1 [Populus trichocarpa] | 0 |
| Q9SCV9 | Beta-galactosidase 3 OS=Arabidopsis thaliana OX=3702 GN=BGAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2MDY4 | Beta-galactosidase OS=Salix viminalis OX=40686 GN=SVIM_LOCUS353733 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology