Basic Information
Locus ID:
evm.TU.utg000009l.1105
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000009l | 10638493 | 10646063 | + | evm.TU.utg000009l.1105 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.40 | 94,205.39 Da | 39.88 | 77.20 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15567 | PHD4_NSD | 519 | 558 | 2.74631E-14 | - |
| Pfam | PF16135 | Tify domain binding domain | 452 | 501 | 4.8E-15 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 249 | 303 | 5.0E-13 | IPR032308 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 701 | 828 | 9.66E-9 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 578 | 638 | 2.88E-6 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 514 | 559 | 2.47E-13 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 512 | 562 | 1.1E-15 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 582 | 644 | 4.0E-10 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 686 | 848 | 3.5E-6 | - |
| SMART | SM00249 | PHD_3 | 518 | 559 | 1.4E-10 | IPR001965 |
| SMART | SM00249 | PHD_3 | 585 | 642 | 0.0026 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 583 | 644 | 8.8225 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 516 | 561 | 10.166399 | IPR019787 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 691 | 842 | 9.477178 | IPR000182 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 586 | 641 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 519 | 558 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 109 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 109 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_037496987.1 | uncharacterized protein LOC105636265 [Jatropha curcas] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067KHI8 | PHD-type domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_09035 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology