Basic Information
Locus ID:
evm.TU.utg000008l.999
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000008l | 9885472 | 9887499 | - | evm.TU.utg000008l.999 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 21,668.98 Da | 47.17 | 76.52 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 74 | 126 | 1.74314E-12 | - |
| Pfam | PF12906 | RING-variant domain | 74 | 125 | 1.3E-9 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 71 | 128 | 5.12E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 60 | 136 | 3.8E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 73 | 126 | 2.0E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 66 | 132 | 18.4417 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_012088157.1 | E3 ubiquitin-protein ligase MARCHF8 [Jatropha curcas] | 0 |
| TrEMBL | A0A067LJK8 | RING-CH-type domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_01345 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology