Basic Information
Locus ID:
evm.TU.utg000008l.989
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000008l | 9812273 | 9818233 | - | evm.TU.utg000008l.989 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 86,383.67 Da | 52.32 | 78.90 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 35 | 68 | 0.13 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 14 | 322 | 6.71E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 178 | 3.9E-23 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 179 | 329 | 2.0E-21 | IPR015943 |
| SMART | SM00320 | WD40_4 | 29 | 69 | 0.037 | IPR001680 |
| SMART | SM00320 | WD40_4 | 252 | 290 | 0.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 122 | 161 | 0.29 | IPR001680 |
| SMART | SM00320 | WD40_4 | 71 | 119 | 0.04 | IPR001680 |
| SMART | SM00320 | WD40_4 | 164 | 205 | 0.18 | IPR001680 |
| SMART | SM00320 | WD40_4 | 209 | 249 | 0.93 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 44 | 68 | 8.503359 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 191 | 205 | 8.737287 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 486 | 528 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 705 | 725 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 559 | 589 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 488 | 526 | - | - |
| Coils | Coil | Coil | 780 | 801 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05970.1 | Transducin/WD40 repeat-like superfamily protein. a WD40 repeat protein related to the animal NEDD1/GCP-WD protein, which interacts with the g-tubulin complex. Plays a critical role in MT organization during mitosis | 0 |
| RefSeq | XP_052310953.1 | protein NEDD1 isoform X1 [Populus trichocarpa] | 0 |
| B3H5K9 | Protein NEDD1 OS=Arabidopsis thaliana OX=3702 GN=NEDD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2LTS2 | WD_REPEATS_REGION domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS265620 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg34197 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1084, gene_15708 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah020012 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg38169, Sbi_jg6290 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15560 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003620 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01571, Sgl06742 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000029735, gene:ENSEOMG00000043344 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0013020, CQ.Regalona.r1.3BG0013070 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30175980 |
| Apiaceae | Apium graveolens | 1 | Ag10G01202 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G001260, COCNU_12G008120 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103697585, gene-LOC103704120 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.3608.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G33422 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G05970.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10012734m.g.v1.0, Thhalv10020101m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g09610.v2.2, Sp6g36920.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g053750.2N, BniB02g054740.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1169 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1210 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g00990 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0075s00018.v1.0, Dusal.0178s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 5 | gene.Thate03g13590, gene.Thate03g20800, gene.Thate04g17670 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1976, nbisL1-mrna-3967 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1788 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00038786 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G05339 |
| Poaceae | Echinochloa crus-galli | 2 | AH03.1384, BH03.1506 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0521880, gene-QOZ80_6BG0476940 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0470640.1 |
| Poaceae | Oryza coarctata | 2 | Oco17G001370, Oco18G001290 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g09470.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G150100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702789, Pt_Chr0702792 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G003340, Chr11G015950 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G300000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG028140, gene_TRIDC5BG029600 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G171300.1, TraesCS5B02G168800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb095480_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-28722 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29719 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1642, evm.TU.LG11.995 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g00580 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.359, evm.TU.Scaffold_4_RagTag.1767 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14057, nbisL1-mrna-25971 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-4, nbisL1-mrna-986 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14211, nbisL1-mrna-4568 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000005l.136, evm.TU.utg000008l.989 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000753, Maker00010047 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2063, nbisL1-mrna-468 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-24376, nbisL1-mrna-9417 |
| Salicaceae | Populus euphratica | 2 | populus_peu06479, populus_peu20347 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132637738 |
| Solanaceae | Solanum chilense | 1 | SOLCI001325000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012080 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5932 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G3640 |
| Zosteraceae | Zostera marina | 2 | Zosma01g15990.v3.1, Zosma04g15340.v3.1 |