Basic Information
Locus ID:
evm.TU.utg000008l.846
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
SEC12-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000008l | 8593022 | 8597734 | + | evm.TU.utg000008l.846 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 43,090.81 Da | 41.99 | 87.17 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 119 | 141 | 0.1 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 153 | 184 | 4.9E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 62 | 310 | 1.21E-33 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 8 | 321 | 5.1E-45 | IPR015943 |
| SMART | SM00320 | WD40_4 | 146 | 184 | 0.0018 | IPR001680 |
| SMART | SM00320 | WD40_4 | 278 | 318 | 300.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 238 | 274 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 104 | 142 | 0.65 | IPR001680 |
| SMART | SM00320 | WD40_4 | 54 | 93 | 10.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 159 | 193 | 11.043142 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52190.1 | phosphate transporter traffic facilitator1. Encodes a plant specific protein structurally related to the SEC12 proteins of the early secretory pathway. Mutation of PHF1 impairs Pi transport. Expression was detected in all tissues, and was induced by Pi starvation. Localized in endoplasmic reticulum (ER), and mutation of PHF1 resulted in ER retention and reduced accumulation of the plasma membrane PHT1;1 transporter. | 0 |
| RefSeq | XP_048231971.1 | SEC12-like protein 1 [Ricinus communis] | 0 |
| Q8GYE0 | SEC12-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=PHF1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2J7H8 | Transducin family protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology