Basic Information
Locus ID:
evm.TU.utg000008l.483
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000008l | 3690814 | 3697477 | - | evm.TU.utg000008l.483 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.71 | 60,654.90 Da | 64.83 | 80.09 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 367 | 542 | 8.25244E-105 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 365 | 471 | 5.7E-18 | IPR000555 |
| Pfam | PF08969 | USP8 dimerisation domain | 32 | 128 | 2.9E-12 | IPR015063 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 367 | 498 | 2.62E-20 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 350 | 542 | 3.0E-70 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 19 | 146 | 4.4E-35 | - |
| SMART | SM00232 | pad1_6 | 367 | 495 | 2.4E-18 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 368 | 498 | 31.641823 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| Coils | Coil | Coil | 116 | 136 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_012093028.1 | AMSH-like ubiquitin thioesterase 1 [Jatropha curcas] | 0 |
| Q8VYB5 | AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana OX=3702 GN=AMSH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2M3F9 | AMSH-like ubiquitin thioesterase 1 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology