Basic Information
Locus ID:
evm.TU.utg000008l.389
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000008l | 2934547 | 2940727 | + | evm.TU.utg000008l.389 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.33 | 107,392.05 Da | 48.20 | 85.43 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 71 | 123 | 8.1E-6 | IPR027370 |
| Pfam | PF07839 | Plant calmodulin-binding domain | 849 | 960 | 1.1E-31 | IPR012417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 53 | 129 | 1.99E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 58 | 163 | 2.1E-10 | IPR013083 |
| SMART | SM01054 | CaM_binding_2 | 846 | 960 | 5.8E-25 | IPR012417 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 71 | 126 | 9.877997 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 90 | 99 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 773 | 819 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 731 | 761 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 593 | 617 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 670 | 690 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 657 | 703 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 773 | 820 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G29270.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021592763.1 | uncharacterized protein LOC110600263 [Manihot esculenta] | 0 |
| TrEMBL | A0A2P2QPB6 | Uncharacterized protein MANES_06G088100 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology