Basic Information
Locus ID:
evm.TU.utg000008l.356
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
WRKY transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000008l | 2644903 | 2652364 | + | evm.TU.utg000008l.356 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 80,753.65 Da | 59.04 | 61.61 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 600 | 738 | 6.54395E-70 | IPR000608 |
| Pfam | PF03106 | WRKY DNA -binding domain | 239 | 297 | 3.5E-23 | IPR003657 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 601 | 737 | 1.7E-50 | IPR000608 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 231 | 299 | 1.44E-26 | IPR036576 |
| SUPERFAMILY | SSF54495 | UBC-like | 585 | 743 | 5.01E-62 | IPR016135 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 223 | 300 | 5.6E-31 | IPR036576 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 592 | 741 | 6.8E-66 | IPR016135 |
| SMART | SM00212 | ubc_7 | 600 | 743 | 1.9E-67 | - |
| SMART | SM00774 | WRKY_cls | 238 | 298 | 6.0E-35 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 233 | 299 | 28.253977 | IPR003657 |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 597 | 743 | 59.885349 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 670 | 685 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 156 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 139 | 156 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 222 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 222 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 80 | - | - |
| Coils | Coil | Coil | 66 | 86 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02760.1 | ubiquiting-conjugating enzyme 2. ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene. | 0 |
| RefSeq | XP_015578415.2 | WRKY transcription factor 72B [Ricinus communis] | 0 |
| A0A3Q7GFB5 | WRKY transcription factor 72A OS=Solanum lycopersicum OX=4081 GN=WRKY72A PE=2 SV=1 | 0 | |
| TrEMBL | A0A314YUI8 | Putative WRKY transcription factor 61 OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_12017 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology