Basic Information
Locus ID:
evm.TU.utg000008l.342
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
CHY zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000008l | 2554118 | 2561651 | + | evm.TU.utg000008l.342 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 144,049.78 Da | 53.58 | 86.30 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16464 | RING-H2_Pirh2 | 1147 | 1190 | 4.70876E-19 | - |
| CDD | cd12108 | Hr-like | 605 | 750 | 3.74317E-16 | - |
| CDD | cd12108 | Hr-like | 47 | 172 | 1.19378E-18 | - |
| Pfam | PF14599 | Zinc-ribbon | 1195 | 1252 | 4.0E-25 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 1146 | 1189 | 1.2E-8 | IPR001841 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 48 | 172 | 1.0E-6 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 1019 | 1094 | 2.6E-16 | IPR008913 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 1010 | 1076 | 3.92E-17 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1085 | 1139 | 3.27E-15 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1147 | 1197 | 3.89E-9 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1219 | 1254 | 9.8E-17 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 599 | 772 | 2.0E-13 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 42 | 188 | 7.6E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1141 | 1192 | 5.5E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 1148 | 1189 | 3.8E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1148 | 1190 | 11.677863 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1084 | 1147 | 27.571527 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 1012 | 1081 | 22.984751 | IPR008913 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 276 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18910.1 | zinc ion binding;zinc ion binding. | 0 |
| RefSeq | XP_021665983.1 | zinc finger protein BRUTUS-like At1g18910 [Hevea brasiliensis] | 0 |
| F4IDY5 | Zinc finger protein BRUTUS-like At1g18910 OS=Arabidopsis thaliana OX=3702 GN=At1g18910 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6M2EFW8 | Zinc finger protein BRUTUS-like At1g18910 OS=Populus davidiana OX=266767 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology