Basic Information
Locus ID:
evm.TU.utg000008l.222
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
MADS-box transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000008l | 1689359 | 1690855 | - | evm.TU.utg000008l.222 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.26 | 20,064.09 Da | 63.57 | 90.64 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 2 | 77 | 5.18581E-38 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 4.7E-26 | IPR002100 |
| Pfam | PF01486 | K-box region | 85 | 170 | 5.9E-22 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 2 | 89 | 7.85E-32 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 82 | 8.1E-28 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 5.5E-38 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 86 | 171 | 13.453468 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 30.571489 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 1.7E-28 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 1.7E-28 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 1.7E-28 | IPR002100 |
| Coils | Coil | Coil | 123 | 169 | - | - |
| Coils | Coil | Coil | 86 | 113 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G26310.1 | K-box region and MADS-box transcription factor family protein . Floral homeotic gene encoding a MADS domain protein homologous to AP1. Enhances the flower to shoot transformation in ap1 mutants. | 0 |
| RefSeq | XP_048329882.1 | truncated transcription factor CAULIFLOWER D-like isoform X3 [Ziziphus jujuba var. spinosa] | 0 |
| Q10CQ1 | MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS14 PE=1 SV=2 | 0 | |
| TrEMBL | A0A067JIE7 | MADS-box transcription factor OS=Jatropha curcas OX=180498 GN=JCGZ_26434 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology