Basic Information
Locus ID:
evm.TU.utg000008l.1347
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000008l | 12908073 | 12916661 | + | evm.TU.utg000008l.1347 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 124,862.27 Da | 38.83 | 81.01 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 920 | 953 | 0.013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 457 | 491 | 0.0012 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 839 | 1099 | 2.15E-33 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 351 | 667 | 6.23E-40 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 838 | 1105 | 6.4E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 518 | 693 | 5.1E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 320 | 517 | 6.4E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1005 | 1046 | 97.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 540 | 581 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 494 | 535 | 0.0059 | IPR001680 |
| SMART | SM00320 | WD40_4 | 450 | 491 | 1.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 871 | 911 | 2.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 627 | 668 | 230.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 404 | 444 | 4.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 831 | 868 | 81.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.0E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 584 | 624 | 130.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 914 | 953 | 3.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 344 | 383 | 0.91 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 5.2E-5 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 921 | 955 | 9.783781 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.212169 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.756207 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 457 | 500 | 10.408196 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 921 | 962 | 11.811761 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1106 | 1132 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_024181038.1 | topless-related protein 4 [Rosa chinensis] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8K0HJQ5 | Topless-related protein 4-like OS=Rhamnella rubrinervis OX=2594499 GN=FNV43_RR04172 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology