Basic Information
Locus ID:
evm.TU.utg000008l.1333
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-5-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000008l | 12772838 | 12778741 | - | evm.TU.utg000008l.1333 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 62,774.81 Da | 31.55 | 101.20 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 257 | 359 | 2.05765E-26 | - |
| CDD | cd00030 | C2 | 436 | 529 | 2.89347E-27 | - |
| Pfam | PF00168 | C2 domain | 255 | 359 | 9.2E-24 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 65 | 241 | 7.3E-15 | IPR039010 |
| Pfam | PF00168 | C2 domain | 434 | 529 | 1.5E-24 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 430 | 553 | 6.7E-34 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 253 | 385 | 3.42E-31 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 248 | 383 | 2.2E-33 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 416 | 552 | 6.2E-36 | IPR035892 |
| SMART | SM00239 | C2_3c | 435 | 533 | 6.2E-26 | IPR000008 |
| SMART | SM00239 | C2_3c | 256 | 356 | 2.7E-24 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 236 | 357 | 20.740463 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 60 | 242 | 30.32156 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 417 | 534 | 20.861193 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 451 | 463 | 3.1E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 477 | 490 | 3.1E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 499 | 507 | 3.1E-6 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_015581849.1 | synaptotagmin-5 [Ricinus communis] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2K0D7 | Synaptotagmin-5 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology