Basic Information
Locus ID:
evm.TU.utg000008l.1026
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000008l | 10107920 | 10114857 | + | evm.TU.utg000008l.1026 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.08 | 39,486.83 Da | 41.66 | 77.08 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 80 | 116 | 0.28 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 192 | 226 | 1.7E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 31 | 354 | 3.97E-36 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 6 | 143 | 4.4E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 159 | 244 | 1.1E-17 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 245 | 361 | 2.6E-6 | IPR015943 |
| SMART | SM00320 | WD40_4 | 187 | 226 | 5.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 229 | 274 | 3.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 124 | 184 | 220.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 76 | 117 | 0.015 | IPR001680 |
| SMART | SM00320 | WD40_4 | 19 | 57 | 240.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 194 | 226 | 10.653776 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 194 | 235 | 14.05078 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19430.1 | DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1. This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase. Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis. | 0 |
| RefSeq | XP_021650196.1 | THO complex subunit 6 isoform X1 [Hevea brasiliensis] | 0 |
| Q8L4M1 | THO complex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=THO6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9W4A9 | WD_REPEATS_REGION domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_03G036200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg32905 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11019 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015186 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg40073, Sbi_jg55399, Sbi_jg55402 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14265 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014754 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41778, Sgl46580 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009539, gene:ENSEOMG00000032070 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0014910, CQ.Regalona.r1.8BG0016200 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30259610 |
| Apiaceae | Apium graveolens | 1 | Ag8G01477 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712961 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2041.V1.1 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G19430.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10022744m.g.v1.0, Thhalv10023917m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g32810.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g068700.2N, BniB04g025030.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0835 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno12g03730, gene.Cymno16g04540 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0229s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g16450 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039624 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G16953, Lb5G29491 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.1695, BH03.1852, CH03.2029 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0533330, gene-QOZ80_UnG0724980 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0475690.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_004697, gene-QYE76_059146 |
| Poaceae | Oryza coarctata | 2 | Oco17G003280, Oco18G003210 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g19900.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G163600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0702515 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr10G011480, Chr11G010830, Chr14G012750 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G323100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG030840, gene_TRIDC5BG032650 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G195000.2, TraesCS5B02G190400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb310980_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19889 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32517 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1613, evm.TU.LG22.512 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g03770 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20137 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1026 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1115 |
| Salicaceae | Populus euphratica | 1 | populus_peu23804 |
| Solanaceae | Solanum chilense | 1 | SOLCI007157000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024274 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16716 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1790 |
| Zosteraceae | Zostera marina | 1 | Zosma01g01870.v3.1 |