Basic Information
Locus ID:
evm.TU.utg000007l.216
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Agamous-like MADS-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000007l | 8804347 | 8809072 | - | evm.TU.utg000007l.216 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.43 | 24,539.00 Da | 56.63 | 73.93 | -0.90 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 2 | 71 | 9.43783E-42 | IPR033896 |
| Pfam | PF01486 | K-box region | 86 | 172 | 1.8E-24 | IPR002487 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 7.3E-26 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 72 | 1.57E-32 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 14 | 95 | 3.6E-29 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 5.1E-40 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 32.281658 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 88 | 178 | 13.403203 | IPR002487 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 3.1E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 3.1E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 3.1E-31 | IPR002100 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 95 | - | - |
| Coils | Coil | Coil | 66 | 86 | - | - |
| Coils | Coil | Coil | 122 | 145 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22950.1 | AGAMOUS-like 19. MADS-box protein AGL19 | 0 |
| RefSeq | XP_052307298.1 | agamous-like MADS-box protein AGL19 isoform X2 [Populus trichocarpa] | 0 |
| O82743 | Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K2BW10 | MADS-box protein SOC1-like OS=Populus trichocarpa OX=3694 GN=POPTR_001G112400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology