Basic Information
Locus ID:
evm.TU.utg000006l.697
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
transcriptional co-repressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000006l | 7736895 | 7743166 | + | evm.TU.utg000006l.697 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 84,470.73 Da | 46.78 | 70.28 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 498 | 775 | 3.15072E-60 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 661 | 692 | 0.011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 740 | 775 | 9.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 499 | 526 | 5.3E-5 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 36 | 2.0E-6 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 534 | 568 | 4.7E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 493 | 775 | 1.42E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 628 | 775 | 1.8E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 469 | 627 | 2.3E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 487 | 526 | 4.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 654 | 692 | 0.0035 | IPR001680 |
| SMART | SM00320 | WD40_4 | 572 | 612 | 0.48 | IPR001680 |
| SMART | SM00320 | WD40_4 | 695 | 734 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 615 | 651 | 22.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 529 | 568 | 4.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 736 | 775 | 6.8E-6 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0036 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 536 | 577 | 14.41838 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 494 | 529 | 9.441055 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 536 | 571 | 11.708317 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.24612 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 743 | 775 | 12.868311 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 743 | 775 | 13.950525 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 494 | 535 | 12.313033 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 513 | 527 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 555 | 569 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 762 | 775 | 1.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 513 | 527 | 1.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 555 | 569 | 1.0E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 401 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_021633058.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X2 [Manihot esculenta] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9UNV0 | LisH domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_13G045500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology