halophFGD

Basic Information

Locus ID: evm.TU.utg000006l.678

Species & Taxonomic ID: Kandelia candel & 61147

Genome Assembly: GCA_037832225.1

Description: response regulator

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
PERG.utg000006l	7592169	7592757	+	evm.TU.utg000006l.678

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.78	16,467.78 Da	33.19	96.22	-0.22

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd17546	REC_hyHK_CKI1_RcsC-like	25	134	1.05756E-37	-
Pfam	PF00072	Response regulator receiver domain	25	134	1.1E-23	IPR001789
SUPERFAMILY	SSF52172	CheY-like	20	137	3.84E-30	IPR011006
Gene3D	G3DSA:3.40.50.2300	-	10	142	1.1E-31	-
SMART	SM00448	REC_2	22	134	6.7E-27	IPR001789
ProSiteProfiles	PS50110	Response regulatory domain profile.	23	138	36.114548	IPR001789

Gene Ontology

Biological Process:

GO:0000160 (phosphorelay signal transduction system)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G26594.1	response regulator 24. Encodes an atypical subtype of the ARR (Arabidopsis response regulator) protein family . It appears to be expressed in floral buds, mature flowers, and pollen. But, unlike the related ARR22 protein, it does not appear to be expressed at the seed:funiculus junction.
RefSeq	XP_048232408.1	two-component response regulator 24 [Ricinus communis]
Swiss-Prot	F4JZT3	Two-component response regulator 24 OS=Arabidopsis thaliana OX=3702 GN=ARR24 PE=2 SV=1
TrEMBL	B9S583	Sensory transduction histidine kinase bacterial, putative OS=Ricinus communis OX=3988 GN=RCOM_1722740 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg20803
Aizoaceae	Mesembryanthemum crystallinum	7	gene_11928, gene_12706, gene_19003, gene_19353, gene_22447 ... gene_22450, gene_2895
Amaranthaceae	Atriplex hortensis	7	Ah000290, Ah000291, Ah011396, Ah011401, Ah021997, Ah021998 ... Ah021999
Amaranthaceae	Beta vulgaris	2	BVRB_3g062070, BVRB_5g120170
Amaranthaceae	Salicornia bigelovii	10	Sbi_jg31588, Sbi_jg31589, Sbi_jg31594, Sbi_jg31595 ... Sbi_jg44784, Sbi_jg57692, Sbi_jg57696, Sbi_jg57700, Sbi_jg57703, Sbi_jg57707
Amaranthaceae	Salicornia europaea	4	Seu_jg25350, Seu_jg25351, Seu_jg25355, Seu_jg25357
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00001540, GOSA_00007951, GOSA_00029273, GOSA_00029274
Amaranthaceae	Suaeda glauca	9	Sgl42067, Sgl46843, Sgl54221, Sgl54277, Sgl54329, Sgl56859 ... Sgl59564, Sgl59617, Sgl59629
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000010614, gene:ENSEOMG00000020162 ... gene:ENSEOMG00000022349, gene:ENSEOMG00000022564, gene:ENSEOMG00000052238
Amaranthaceae	Chenopodium quinoa	12	CQ.Regalona.r1.2BG0012530, CQ.Regalona.r1.2BG0012540 ... CQ.Regalona.r1.2BG0012560, CQ.Regalona.r1.3AG0018830, CQ.Regalona.r1.3AG0021830, CQ.Regalona.r1.3AG0021850, CQ.Regalona.r1.3BG0019450, CQ.Regalona.r1.3BG0022630, CQ.Regalona.r1.3BG0022650, CQ.Regalona.r1.5AG0025450, CQ.Regalona.r1.5AG0025460, CQ.Regalona.r1.5BG0027010
Anacardiaceae	Pistacia vera	1	pistato.v30093300
Apiaceae	Apium graveolens	2	Ag7G02004, Ag9G02334
Arecaceae	Cocos nucifera	1	COCNU_09G002200
Arecaceae	Phoenix dactylifera	3	gene-LOC103714601, gene-LOC103719077, gene-LOC103723779
Asparagaceae	Asparagus officinalis	1	AsparagusV1_09.464.V1.1
Brassicaceae	Arabidopsis thaliana	3	AT3G04270.1, AT3G04280.1, AT5G26594.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10005298m.g.v1.0, Thhalv10022233m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp2g21440.v2.2, Sp3g03180.v2.2
Brassicaceae	Brassica nigra	5	BniB01g059240.2N, BniB02g078560.2N, BniB04g004330.2N ... BniB07g033830.2N, BniB07g039220.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq06G2035, Ceq06G2036
Casuarinaceae	Casuarina glauca	2	Cgl06G2142, Cgl06G2143
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno07g11060
Dunaliellaceae	Dunaliella salina	1	Dusal.0607s00010.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate04g27750
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG02.1274, evm.TU.LG03.2130, evm.TU.LG03.2151 ... evm.TU.LG03.2152, evm.TU.LG04.1503
Plantaginaceae	Plantago ovata	2	Pov_00016448, Pov_00016450
Poaceae	Echinochloa crus-galli	13	AH01.1907, AH04.1149, AH09.215, BH01.2341, BH01.792 ... BH09.302, BH09.316, CH01.2430, CH01.790, CH02.3714, CH09.112, CH09.327, CH09.350
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_3AG0216730, gene-QOZ80_3AG0216830 ... gene-QOZ80_3BG0262100
Poaceae	Hordeum vulgare	18	HORVU.MOREX.r3.1HG0007300.1, HORVU.MOREX.r3.1HG0066720.1 ... HORVU.MOREX.r3.1HG0095180.1, HORVU.MOREX.r3.1HG0095300.1, HORVU.MOREX.r3.2HG0121500.1.CDS1, HORVU.MOREX.r3.2HG0190330.1.CDS1, HORVU.MOREX.r3.3HG0227270.1.CDS1, HORVU.MOREX.r3.3HG0252670.1, HORVU.MOREX.r3.3HG0252680.1, HORVU.MOREX.r3.3HG0252690.1, HORVU.MOREX.r3.3HG0252720.1, HORVU.MOREX.r3.3HG0252730.1, HORVU.MOREX.r3.4HG0386610.1.CDS1, HORVU.MOREX.r3.4HG0394540.1.CDS1, HORVU.MOREX.r3.5HG0451090.1.CDS1, HORVU.MOREX.r3.5HG0509580.1, HORVU.MOREX.r3.5HG0522040.1, HORVU.MOREX.r3.6HG0594310.1.CDS1
Poaceae	Lolium multiflorum	14	gene-QYE76_021402, gene-QYE76_021485, gene-QYE76_038296 ... gene-QYE76_038298, gene-QYE76_038299, gene-QYE76_038301, gene-QYE76_038302, gene-QYE76_038842, gene-QYE76_038844, gene-QYE76_038846, gene-QYE76_038847, gene-QYE76_038849, gene-QYE76_061957, gene-QYE76_062035
Poaceae	Oryza coarctata	3	Oco05G023200, Oco06G024090, Oco07G001560
Poaceae	Oryza sativa	2	LOC_Os03g53100.1, LOC_Os04g13480.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G085900, gene-BS78_06G045600
Poaceae	Puccinellia tenuiflora	13	Pt_Chr0107100, Pt_Chr0200154, Pt_Chr0200155, Pt_Chr0200176 ... Pt_Chr0200177, Pt_Chr0303632, Pt_Chr0305764, Pt_Chr0305765, Pt_Chr0305766, Pt_Chr0305813, Pt_Chr0305814, Pt_Chr0305815, Pt_Chr0600594
Poaceae	Sporobolus alterniflorus	6	Chr01G005610, Chr03G007880, Chr03G007900, Chr23G017730 ... Chr23G017760, Chr26G001960
Poaceae	Thinopyrum elongatum	15	Tel1E01G751100, Tel1E01G752700, Tel1E01G752800 ... Tel1E01G752900, Tel1E01G753000, Tel2E01G159600, Tel2E01G159900, Tel2E01G160000, Tel2E01G160100, Tel2E01G160600, Tel2E01G160900, Tel5E01G607300, Tel5E01G716000, Tel7E01G298700, Telscf46301G000100
Poaceae	Triticum dicoccoides	32	gene_TRIDC1AG065120, gene_TRIDC1AG065300 ... gene_TRIDC1AG065310, gene_TRIDC1AG065320, gene_TRIDC1AG065330, gene_TRIDC1AG065340, gene_TRIDC1AG065350, gene_TRIDC1BG074380, gene_TRIDC1BG074580, gene_TRIDC1BG074590, gene_TRIDC1BG074600, gene_TRIDC1BG074610, gene_TRIDC1BG074620, gene_TRIDC2AG008040, gene_TRIDC2BG009600, gene_TRIDC2BG009610, gene_TRIDC2BG009630, gene_TRIDC2BG009680, gene_TRIDC2BG009700, gene_TRIDC5AG055780, gene_TRIDC5AG064960, gene_TRIDC5AG064970, gene_TRIDC5AG065040, gene_TRIDC5AG065050, gene_TRIDC5AG065060, gene_TRIDC5AG065710, gene_TRIDC5BG059820, gene_TRIDC5BG069930, gene_TRIDC5BG069940, gene_TRIDC5BG070000, gene_TRIDC5BG070010, gene_TRIDC7AG017890
Poaceae	Triticum aestivum	46	TraesCS1A02G444100.1, TraesCS1A02G445100.1 ... TraesCS1A02G445200.1, TraesCS1A02G445300.1, TraesCS1A02G445400.1, TraesCS1B02G478600.1, TraesCS1B02G479900.1, TraesCS1B02G480000.1, TraesCS1D02G452100.1, TraesCS1D02G453200.1, TraesCS1D02G453300.1, TraesCS1D02G453400.1, TraesCS1D02G453500.1, TraesCS2A02G072100.1, TraesCS2A02G072200.1, TraesCS2A02G072300.1, TraesCS2B02G086400.1, TraesCS2B02G086500.1, TraesCS2B02G086600.1.cds1, TraesCS2B02G087000.1, TraesCS2B02G087100.1, TraesCS2D02G070900.1, TraesCS2D02G071000.1, TraesCS2D02G071100.1, TraesCS2D02G071200.1, TraesCS2D02G071300.1, TraesCS5A02G381600.1, TraesCS5A02G452800.1, TraesCS5A02G453500.1, TraesCS5A02G453600.1, TraesCS5A02G458200.1, TraesCS5B02G385400.1, TraesCS5B02G461800.1, TraesCS5B02G462300.1, TraesCS5B02G462400.1, TraesCS5D02G391200.1, TraesCS5D02G463200.1, TraesCS5D02G464100.1, TraesCS7A02G146800.1.cds1, TraesCS7B02G049600.1.cds1, TraesCSU02G193400.1, TraesCSU02G193500.1, TraesCSU02G217100.1, TraesCSU02G226300.1, TraesCSU02G233100.1, TraesCSU02G240700.1
Poaceae	Zea mays	2	Zm00001eb056810_P001, Zm00001eb088320_P001
Poaceae	Zoysia japonica	3	nbis-gene-15025, nbis-gene-32085, nbis-gene-32087
Poaceae	Zoysia macrostachya	5	Zma_g20935, Zma_g20936, Zma_g20939, Zma_g506, Zma_g507
Portulacaceae	Portulaca oleracea	4	evm.TU.LG01.2857, evm.TU.LG13.1051, evm.TU.LG13.1253 ... evm.TU.LG21.885
Posidoniaceae	Posidonia oceanica	1	gene.Posoc05g06690
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_5_RagTag.1172, evm.TU.Scaffold_5_RagTag.1173
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-11642, nbisL1-mrna-11643, nbisL1-mrna-17411 ... nbisL1-mrna-19414, nbisL1-mrna-21105, nbisL1-mrna-3270
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-3163, nbisL1-mrna-8985, nbisL1-mrna-9057 ... nbisL1-mrna-9058
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-11270, nbisL1-mrna-11271, nbisL1-mrna-13835 ... nbisL1-mrna-7257
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000006l.268, add.evm.TU.utg000009l.65 ... evm.TU.utg000003l.410, evm.TU.utg000006l.678
Rhizophoraceae	Kandelia obovata	1	Maker00009232
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-1394, nbisL1-mrna-21936, nbisL1-mrna-9865 ... nbisL1-mrna-9866
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-16310, nbisL1-mrna-19873, nbisL1-mrna-19874 ... nbisL1-mrna-4978
Salicaceae	Populus euphratica	9	populus_peu04049, populus_peu04051, populus_peu04052 ... populus_peu19474, populus_peu30799, populus_peu30800, populus_peu34890, populus_peu34891, populus_peu36400
Solanaceae	Lycium barbarum	7	gene-LOC132599525, gene-LOC132611351, gene-LOC132623354 ... gene-LOC132623695, gene-LOC132639658, gene-LOC132642641, gene-LOC132642642
Solanaceae	Solanum chilense	1	SOLCI003293100
Solanaceae	Solanum pennellii	2	gene-LOC107004054, gene-LOC107013492
Tamaricaceae	Reaumuria soongarica	3	gene_1476, gene_15770, gene_18217