Basic Information
Locus ID:
evm.TU.utg000006l.61
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
DNA repair protein recA homolog 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000006l | 601263 | 607855 | + | evm.TU.utg000006l.61 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.59 | 48,328.83 Da | 37.48 | 82.70 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00983 | recA | 90 | 413 | 0.0 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 93 | 355 | 1.1E-117 | IPR013765 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 355 | 412 | 4.97E-18 | IPR023400 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 91 | 354 | 1.23E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 120 | 414 | 8.8E-103 | IPR027417 |
| SMART | SM00382 | AAA_5 | 142 | 313 | 4.8E-9 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 90 | 410 | 1.3E-143 | IPR013765 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 121 | 279 | 28.837778 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 284 | 359 | 28.31838 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 298 | 306 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 212 | 241 | 7.7E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 330 | 359 | 7.7E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 250 | 279 | 7.7E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 384 | 401 | 7.7E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 178 | 207 | 7.7E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 295 | 323 | 7.7E-76 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 91 | 416 | 45.040901 | IPR013765 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79050.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_006370468.1 | DNA repair protein recA homolog 1, chloroplastic [Populus trichocarpa] | 0 |
| Q39199 | DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECA PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2K448 | Uncharacterized protein MANES_15G102600 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology