Basic Information
Locus ID:
evm.TU.utg000006l.485
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
F-box protein At3g62230-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000006l | 5739499 | 5741585 | + | evm.TU.utg000006l.485 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.03 | 54,160.83 Da | 37.98 | 89.10 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 10 | 45 | 9.9E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 46 | 1.96E-9 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 112 | 355 | 7.85E-9 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 139 | 253 | 8.4E-7 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 48 | 9.8E-6 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62230.1 | F-box family protein. | 0 |
| RefSeq | XP_015577141.2 | F-box protein At3g62230 [Ricinus communis] | 0 |
| Q9M1Q1 | F-box protein At3g62230 OS=Arabidopsis thaliana OX=3702 GN=At3g62230 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2ZM16 | F-box domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_000314 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19385 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12468, gene_7579 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah008629, Ah008630, Ah008631 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00026251, GOSA_00026252 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl22603, Sgl22736, Sgl27851 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0021920 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30018600 |
| Arecaceae | Cocos nucifera | 4 | COCNU_08G004250, scaffold000903G000030 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103699294, gene-LOC103713893, gene-LOC120106725 ... |
| Brassicaceae | Arabidopsis thaliana | 5 | AT1G56400.1, AT2G17305.1, AT3G29830.1, AT3G62230.1 ... |
| Brassicaceae | Eutrema salsugineum | 11 | Thhalv10003202m.g.v1.0, Thhalv10003319m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 10 | Sp4g03660.v2.2, Sp4g04050.v2.2, Sp4g05500.v2.2 ... |
| Brassicaceae | Brassica nigra | 13 | BniB02g027420.2N, BniB02g086780.2N, BniB03g060200.2N ... |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG05.1732, evm.TU.LG05.1734, evm.TU.LG08.732 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.646, evm.TU.LG24.106 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc10g01440, gene.Posoc10g01450 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.411 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23568 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6728 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10410 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.485 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-22093 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23560 |
| Salicaceae | Populus euphratica | 2 | populus_peu00330, populus_peu17391 |