Basic Information
Locus ID:
evm.TU.utg000006l.415
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Short Name:
ABCC5
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000006l | 3466050 | 3471196 | - | evm.TU.utg000006l.415 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.83 | 143,794.84 Da | 39.93 | 106.82 | 0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 640 | 839 | 8.20135E-104 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 327 | 614 | 3.12809E-103 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 965 | 1259 | 9.38616E-93 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 967 | 1209 | 3.5E-27 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 329 | 594 | 3.3E-29 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 658 | 792 | 1.8E-18 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 633 | 862 | 3.1E-54 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 314 | 622 | 2.62E-38 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 964 | 1264 | 8.24E-51 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 296 | 623 | 5.4E-55 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 926 | 1264 | 1.1E-58 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 638 | 868 | 1.7E-69 | IPR027417 |
| SMART | SM00382 | AAA_5 | 667 | 848 | 1.9E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 329 | 606 | 36.447937 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 640 | 863 | 22.569136 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 967 | 1237 | 36.022022 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 765 | 779 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 916 | 937 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_021667778.1 | ABC transporter C family member 5-like isoform X1 [Hevea brasiliensis] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2KA88 | ABC-type xenobiotic transporter OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology