Basic Information
Locus ID:
evm.TU.utg000006l.29
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000006l | 265429 | 271430 | - | evm.TU.utg000006l.29 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 133,621.84 Da | 41.73 | 74.12 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06410 | PB1_UP2 | 110 | 206 | 6.98756E-40 | - |
| CDD | cd13999 | STKc_MAP3K-like | 946 | 1191 | 2.41938E-83 | - |
| Pfam | PF00564 | PB1 domain | 124 | 206 | 1.1E-14 | IPR000270 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 941 | 1191 | 8.8E-44 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 929 | 1191 | 7.62E-62 | IPR011009 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 122 | 212 | 1.37E-19 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1027 | 1210 | 8.0E-37 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 125 | 208 | 6.5E-12 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 927 | 1026 | 1.9E-22 | - |
| SMART | SM00220 | serkin_6 | 940 | 1193 | 1.3E-33 | IPR000719 |
| SMART | SM00666 | PB1_new | 121 | 208 | 1.8E-22 | IPR000270 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 940 | 1193 | 30.350658 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1065 | 1077 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1022 | 1035 | 7.4E-10 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1162 | 1184 | 7.4E-10 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1059 | 1077 | 7.4E-10 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 688 | 710 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79570.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_002307185.4 | uncharacterized protein LOC7480431 [Populus trichocarpa] | 0 |
| Q9SAJ2 | RAF-like serine/threonine-protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=RAF20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JWA4 | Protein kinase domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology