Basic Information
Locus ID:
evm.TU.utg000006l.237
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
WD repeat domain phosphoinositide-interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000006l | 2045670 | 2049206 | - | evm.TU.utg000006l.237 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 47,742.55 Da | 54.87 | 82.04 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 299 | 329 | 0.0068 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 83 | 333 | 6.57E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 95 | 408 | 2.8E-18 | IPR015943 |
| SMART | SM00320 | WD40_4 | 289 | 330 | 0.017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 62 | 109 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 246 | 286 | 0.1 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 59 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_021647869.1 | autophagy-related protein 18a-like [Hevea brasiliensis] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LL31 | Autophagy-related protein 18a-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology