Basic Information
Locus ID:
evm.TU.utg000006l.134
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000006l | 1232644 | 1239019 | + | evm.TU.utg000006l.134 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 99,222.97 Da | 62.19 | 81.14 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 745 | 780 | 0.0093 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 659 | 696 | 2.0E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 572 | 882 | 1.16E-48 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 74 | 340 | 1.31E-21 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 549 | 885 | 1.2E-117 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 78 | 345 | 6.3E-24 | - |
| SMART | SM00320 | WD40_4 | 568 | 603 | 1.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 839 | 883 | 39.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 789 | 828 | 12.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 699 | 738 | 2.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 742 | 780 | 5.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 656 | 696 | 6.8E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 617 | 653 | 47.0 | IPR001680 |
| SMART | SM00220 | serkin_6 | 9 | 335 | 9.8E-5 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 749 | 782 | 9.941962 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 335 | 12.697292 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 663 | 705 | 13.348998 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 749 | 782 | 11.912015 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 663 | 700 | 10.548323 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 767 | 781 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 767 | 781 | 3.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 683 | 697 | 3.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 640 | 654 | 3.8E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.3 | - | 0 |
| RefSeq | XP_052301625.1 | protein SPA1-RELATED 4 isoform X1 [Populus trichocarpa] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MKL9 | Protein SPA1-RELATED 3 isoform X2 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology