Basic Information
Locus ID:
evm.TU.utg000006l.1022
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
G3BP-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000006l | 10160533 | 10169202 | + | evm.TU.utg000006l.1022 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 87,914.75 Da | 49.13 | 83.30 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00780 | NTF2 | 338 | 458 | 5.79775E-42 | IPR018222 |
| CDD | cd00590 | RRM_SF | 623 | 692 | 1.44644E-10 | - |
| Pfam | PF02136 | Nuclear transport factor 2 (NTF2) domain | 342 | 458 | 2.2E-30 | IPR002075 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 623 | 679 | 1.9E-8 | IPR000504 |
| Pfam | PF00810 | ER lumen protein retaining receptor | 75 | 217 | 2.9E-35 | IPR000133 |
| SUPERFAMILY | SSF54427 | NTF2-like | 339 | 458 | 3.02E-35 | IPR032710 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 617 | 726 | 2.04E-17 | IPR035979 |
| Gene3D | G3DSA:3.10.450.50 | - | 332 | 463 | 3.2E-35 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 614 | 724 | 9.9E-14 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 622 | 692 | 7.6E-12 | IPR000504 |
| ProSiteProfiles | PS50177 | Nuclear transport factor 2 domain profile. | 342 | 458 | 31.492008 | IPR018222 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 621 | 696 | 11.485845 | IPR000504 |
| PRINTS | PR00660 | ER lumen protein retaining receptor signature | 205 | 223 | 3.0E-16 | IPR000133 |
| PRINTS | PR00660 | ER lumen protein retaining receptor signature | 78 | 98 | 3.0E-16 | IPR000133 |
| PRINTS | PR00660 | ER lumen protein retaining receptor signature | 51 | 70 | 3.0E-16 | IPR000133 |
| PRINTS | PR00660 | ER lumen protein retaining receptor signature | 191 | 205 | 3.0E-16 | IPR000133 |
| PRINTS | PR00660 | ER lumen protein retaining receptor signature | 169 | 189 | 3.0E-16 | IPR000133 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 694 | 795 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 501 | 547 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 590 | 616 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 532 | 547 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 737 | 755 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 766 | 780 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 590 | 612 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 469 | 488 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 509 | 523 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25150.1 | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain. | 0 |
| RefSeq | XP_021690372.1 | putative G3BP-like protein [Hevea brasiliensis] | 0 |
| Q9FME2 | Nuclear transport factor 2 OS=Arabidopsis thaliana OX=3702 GN=NTF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4S4DBR1 | NTF2 domain-containing protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_017560 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology