Basic Information
Locus ID:
evm.TU.utg000005l.79
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
PWWP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000005l | 2068306 | 2073425 | - | evm.TU.utg000005l.79 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.56 | 159,332.31 Da | 46.23 | 74.41 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 824 | 910 | 3.20834E-30 | - |
| Pfam | PF00855 | PWWP domain | 824 | 910 | 1.5E-16 | IPR000313 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 1355 | 1415 | 5.5E-5 | IPR035979 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 820 | 924 | 9.03E-26 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 815 | 917 | 1.8E-25 | - |
| SMART | SM00293 | PWWP_4 | 824 | 885 | 1.7E-9 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 826 | 887 | 14.321783 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1026 | 1062 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 664 | 694 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1290 | 1314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 575 | 598 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1287 | 1330 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 575 | 601 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1076 | 1120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 669 | 685 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02950.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_021644089.1 | uncharacterized protein LOC110638000 isoform X2 [Hevea brasiliensis] | 0 |
| Q9LYZ0 | PWWP domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=PDP5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2MS56 | Dentin sialophosphoprotein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology