Basic Information
Locus ID:
evm.TU.utg000005l.362
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000005l | 5517631 | 5525957 | + | evm.TU.utg000005l.362 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.10 | 152,198.91 Da | 40.53 | 108.98 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1108 | 1328 | 2.15935E-120 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 791 | 1085 | 1.06764E-93 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 314 | 602 | 2.33713E-84 | IPR044746 |
| Pfam | PF00664 | ABC transporter transmembrane region | 811 | 1037 | 1.8E-31 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 314 | 581 | 3.3E-29 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1127 | 1275 | 3.3E-28 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 794 | 1092 | 1.06E-48 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 301 | 608 | 9.16E-36 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1103 | 1340 | 1.18E-66 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 650 | 703 | 1.67E-8 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 763 | 1091 | 1.9E-54 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1093 | 1346 | 3.3E-78 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 282 | 611 | 2.3E-48 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 646 | 736 | 5.7E-10 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1136 | 1328 | 2.7E-13 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1112 | 1344 | 16.846876 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 313 | 594 | 35.940266 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 793 | 1073 | 36.151318 | IPR011527 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 726 | 758 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 726 | 747 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_021659378.1 | putative ABC transporter C family member 15 isoform X1 [Hevea brasiliensis] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2JCN5 | ABC-type xenobiotic transporter OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology