Basic Information
Locus ID:
evm.TU.utg000005l.11
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Poly(A) polymerase central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000005l | 100165 | 106464 | + | evm.TU.utg000005l.11 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 85,691.60 Da | 47.61 | 74.78 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 60 | 214 | 1.38741E-29 | - |
| Pfam | PF01909 | Nucleotidyltransferase domain | 86 | 169 | 9.3E-10 | IPR002934 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 20 | 364 | 5.9E-110 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 366 | 422 | 9.5E-12 | IPR007010 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 215 | 364 | 4.45E-64 | - |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 20 | 213 | 4.96E-51 | IPR043519 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 365 | 491 | 3.34E-34 | IPR011068 |
| Gene3D | G3DSA:1.10.1410.10 | - | 20 | 362 | 6.4E-160 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 366 | 481 | 7.3E-27 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 52 | 208 | 6.4E-160 | IPR043519 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 607 | 633 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 604 | 729 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 526 | 551 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 679 | 694 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 657 | 678 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 702 | 721 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 517 | 558 | - | - |
| Coils | Coil | Coil | 652 | 672 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17980.1 | poly(A) polymerase 1. Encodes a poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_024442379.1 | nuclear poly(A) polymerase 1 [Populus trichocarpa] | 0 |
| Q9LMT2 | Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=PAPS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K1XHU2 | polynucleotide adenylyltransferase OS=Populus trichocarpa OX=3694 GN=POPTR_015G043200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology